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limorhyde2 0.0.12

  • Added isAlreadyInParallel() function that checks if you are already running something in parallel.
  • Added check to getRhythmStats() to prevent running in parallel if already in parallel.

limorhyde2 0.0.11

limorhyde2 0.0.10

  • Matched styling to lab standards.

limorhyde2 0.0.9

  • Enabled spline fit with fewer knots and customizable degree.

limorhyde2 0.0.8

  • Matched style to lab standard.

limorhyde2 0.0.7

CRAN release: 2022-03-08

  • Made data smaller and examples faster.

limorhyde2 0.0.6

  • Switched to using updated ashr from CRAN.

limorhyde2 0.0.4

  • Added more stringent checking for correspondence between measurements matrix and metadata.

limorhyde2 0.0.3

  • Made mash silent.
  • Added checking for parallel backend, to avoid warning messages.

limorhyde2 0.0.2

  • Moved data to data/, to make examples and vignettes simpler.
  • Added examples.

limorhyde2 0.0.1

  • Updated vignette for analyzing RNA-seq data.

limorhyde2 0.0.0.9033

  • Renamed mean_value to mesor and added differential rhythm statistics for mean mesor and mean amp.

limorhyde2 0.0.0.9032

  • Added differential rhythm statistic diff_rhy_dist.

limorhyde2 0.0.0.9031

  • Cleaned up calculation of credible intervals for rhythm amplitudes.

limorhyde2 0.0.0.9030

  • Updated model parameterization and mashing to treat all conditions fairly.

limorhyde2 0.0.0.9029

  • Updated calculation of credible intervals for rhythm amplitudes.

limorhyde2 0.0.0.9028

  • Added vignette for RNA-seq data.

limorhyde2 0.0.0.9027

  • Added ability to fit models using DESeq2.

limorhyde2 0.0.0.9026

  • Made calculation of rms-based stats optional.
  • Simplified tests to use snapshotting.

limorhyde2 0.0.0.9025

  • Changed assertLogical() to assertFlag() for checking inputs.

limorhyde2 0.0.0.9024

  • Fixed vignette building on Windows machines

limorhyde2 0.0.0.9023

  • Fixed factor weirdness between R versions

limorhyde2 0.0.0.9022

limorhyde2 0.0.0.9021

  • Fixed bug so getDiffRhythmStats uses all shifted models

limorhyde2 0.0.0.9020

limorhyde2 0.0.0.9019

  • Clarified wording in vignettes

limorhyde2 0.0.0.9018

  • Added function to merge measurements and metadata
  • Added vignettes

limorhyde2 0.0.0.9017

  • Fixed bug in getStatsIntervals

limorhyde2 0.0.0.9016

  • Cleaned up logic around nKnots for cosinor
  • Fixed setting attributes for data.tables
  • Fixed input check in getDiffRhythmStats

limorhyde2 0.0.0.9015

  • Revamped input checking to use the checkmate package